Resource
| Id | TF_ChIP-seq/ENCSR000BQY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BQY [biosample_summary="Homo sapiens K562" and target="PML"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF800QDU|/files/ENCFF800QDU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN454OYO|/analyses/ENCAN454OYO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF112WHF|/files/ENCFF112WHF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19125330 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PML-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BQY | float |
TF_ChIP-seq_ENCSR000BQY |
TF_ChIP-seq ENCSR000BQY [biosample_summary="Homo sapiens K562" and target="PML"]
|
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[6.78, 792] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 8702930 | 0.27% | 24967 |
| chr1 | 1084240 | 0.44% | 3192 |
| chr1_KI270713v1_random | 1135 | 2.79% | 4 |
| chr2 | 638689 | 0.26% | 1842 |
| chr3 | 518120 | 0.26% | 1458 |
| chr4 | 337845 | 0.18% | 967 |
| chr5 | 440870 | 0.24% | 1278 |
| chr6 | 721975 | 0.42% | 2128 |
| chr7 | 554177 | 0.35% | 1632 |
| chr8 | 330967 | 0.23% | 932 |
| chr9 | 288443 | 0.21% | 791 |
| chr10 | 333837 | 0.25% | 937 |
| chr11 | 471434 | 0.35% | 1348 |
| chr12 | 448382 | 0.34% | 1266 |
| chr13 | 92793 | 0.08% | 257 |
| chr14 | 176825 | 0.17% | 487 |
| chr15 | 245470 | 0.24% | 695 |
| chr16 | 337851 | 0.37% | 991 |
| chr17 | 431281 | 0.52% | 1224 |
| chr18 | 119337 | 0.15% | 330 |
| chr19 | 474548 | 0.81% | 1389 |
| chr20 | 192032 | 0.30% | 543 |
| chr21 | 84558 | 0.18% | 260 |
| chr22 | 160675 | 0.32% | 450 |
| chrM | 9837 | 59.37% | 37 |
| chrX | 207609 | 0.13% | 529 |
| 3341 contigs with no values (186247186 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24967 | 1 | 5257 | 348.58 | 317 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF800QDU.bed.gz | 357.18 KB | 6eec23a48cdde52ad1922299a27a72ad |
| ENCFF800QDU.tabix.bed.gz | 286.58 KB | c4cecd91dda6419ff94483e51b9dfa40 |
| ENCFF800QDU.tabix.bed.gz.tbi | 120.61 KB | 6dc50d11272578305e9f42c3fe4665cd |
| genomic_resource.yaml | 2.01 KB | 5755f0daff5fdb1d39d204de6d17d0e7 |
| statistics/ |
