Resource

Id TF_ChIP-seq/ENCSR000BQXcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQX [biosample_summary="Homo sapiens HepG2" and target="NFIC"]
Description
Labels
  • accession: ENCSR000BQX
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-09-13T16:53:15.597631-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: NFIC

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQX float

TF_ChIP-seq_ENCSR000BQX
TF_ChIP-seq ENCSR000BQX [biosample_summary="Homo sapiens HepG2" and target="NFIC"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQX [31.8, 484]
n
7,351,705
mean
56.9
sd
36.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 73517050.23% 16885
chr1 609603 0.24% 1376
chr2 906466 0.37% 2142
chr3 465726 0.23% 1065
chr4 285476 0.15% 644
chr5 317054 0.17% 750
chr6 625114 0.37% 1463
chr7 333422 0.21% 771
chr8 273829 0.19% 625
chr9 281030 0.20% 630
chr10 294164 0.22% 677
chr11 305623 0.23% 684
chr12 332620 0.25% 751
chr13 130026 0.11% 281
chr14 274446 0.26% 652
chr15 156020 0.15% 343
chr16 363587 0.40% 837
chr17 452553 0.54% 1030
chr18 121760 0.15% 282
chr19 219870 0.38% 476
chr20 344885 0.54% 823
chr21 63621 0.14% 138
chr22 102449 0.20% 229
chrX 90729 0.06% 213
chrY 1632 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16885 1 1250 435.4 544
global segment-length histogram

Files

Filename Size md5
ENCFF002CKS.bed.gz 389.09 KB aabd93ffbf4f2819de43a0e55460aa7a
ENCFF002CKS.tabix.bed.gz 258.42 KB 75622f4f201d50235afcc9512add6801
ENCFF002CKS.tabix.bed.gz.tbi 109.08 KB df7677f4802f87560ff41361d3838211
genomic_resource.yaml 1.47 KB e0e5e067e95f5eb123dd8d9bf45df01a
statistics/