Resource

Id TF_ChIP-seq/ENCSR000BQWcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQW [biosample_summary="Homo sapiens HepG2" and target="MBD4"]
Description
Labels
  • accession: ENCSR000BQW
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-09-13T16:53:15.786591-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: MBD4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQW float

TF_ChIP-seq_ENCSR000BQW
TF_ChIP-seq ENCSR000BQW [biosample_summary="Homo sapiens HepG2" and target="MBD4"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQW [35.6, 229]
n
3,076,986
mean
48.2
sd
14.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 30769860.10% 6249
chr1 209083 0.08% 414
chr2 510124 0.21% 1099
chr3 174798 0.09% 345
chr4 127503 0.07% 252
chr5 101348 0.06% 198
chr6 333458 0.20% 699
chr7 117701 0.07% 232
chr8 104465 0.07% 209
chr9 95058 0.07% 190
chr10 119725 0.09% 246
chr11 103997 0.08% 205
chr12 123974 0.09% 254
chr13 37746 0.03% 69
chr14 144178 0.13% 300
chr15 48287 0.05% 94
chr16 148550 0.16% 289
chr17 212612 0.26% 425
chr18 34911 0.04% 65
chr19 57407 0.10% 116
chr20 199323 0.31% 406
chr21 22243 0.05% 43
chr22 31207 0.06% 60
chrX 19288 0.01% 39
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 6249 2 1905 492.4 564
global segment-length histogram

Files

Filename Size md5
ENCFF002CKQ.bed.gz 142.39 KB ac8457119d81e49f3cb820183b3253e3
ENCFF002CKQ.tabix.bed.gz 96.66 KB 1d9fcb9819e70054ee2aedb4c58cf228
ENCFF002CKQ.tabix.bed.gz.tbi 50.62 KB 5ac8db7b52bc7a6b0b03109aab05596f
genomic_resource.yaml 1.47 KB b07ee06f35bd2db20141d88c993e9c2a
statistics/