Resource

Id TF_ChIP-seq/ENCSR000BQVcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQV [biosample_summary="Homo sapiens H1" and target="SP4"]
Description
Labels
  • accession: ENCSR000BQV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2013-12-12T06:33:10.651750+00:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SP4

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQV float

TF_ChIP-seq_ENCSR000BQV

TF_ChIP-seq ENCSR000BQV [biosample_summary="Homo sapiens H1" and target="SP4"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQV [32.9, 478]
n
3,236,001
mean
47.9
sd
32.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 32360010.10% 6137
chr1 361215 0.15% 686
chr2 196501 0.08% 371
chr3 169458 0.09% 311
chr4 102448 0.05% 190
chr5 134664 0.07% 245
chr6 183740 0.11% 339
chr7 157866 0.10% 289
chr8 93476 0.06% 174
chr9 123804 0.09% 235
chr10 124532 0.09% 233
chr11 191426 0.14% 360
chr12 182086 0.14% 347
chr13 51026 0.04% 92
chr14 93813 0.09% 177
chr15 101779 0.10% 192
chr16 162872 0.18% 315
chr17 215788 0.26% 412
chr18 28308 0.04% 51
chr19 355530 0.61% 726
chr20 89628 0.14% 164
chr21 25962 0.06% 52
chr22 67069 0.13% 132
chrX 23010 0.01% 44
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 6137 2 1202 527.29 610
global segment-length histogram

Files

Filename Size md5
ENCFF002CJM.bed.gz 110.23 KB 9feafb94ff370856471d807118f1d1f0
ENCFF002CJM.tabix.bed.gz 95.13 KB 742cd80afd9b84f87f4f841b7fdea869
ENCFF002CJM.tabix.bed.gz.tbi 52.25 KB e0c99c27f2889d2e004eb920f345aa8c
genomic_resource.yaml 1.46 KB 4fb070d6f171f538954504eb14845d1e
statistics/