Resource

Id TF_ChIP-seq/ENCSR000BQTcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQT [biosample_summary="Homo sapiens GM12878" and target="TCF3"]
Description
Labels
  • accession: ENCSR000BQT
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:54:09.860637-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: TCF3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQT float

TF_ChIP-seq_ENCSR000BQT

TF_ChIP-seq ENCSR000BQT [biosample_summary="Homo sapiens GM12878" and target="TCF3"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQT [18.5, 397]
n
4,457,230
mean
36
sd
27.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 44572300.14% 16101
chr1 412387 0.17% 1484
chr2 331808 0.14% 1194
chr3 246303 0.12% 900
chr4 165629 0.09% 598
chr5 213453 0.12% 784
chr6 285074 0.17% 1013
chr7 213574 0.13% 771
chr8 172569 0.12% 628
chr9 180456 0.13% 651
chr10 196492 0.15% 716
chr11 223870 0.17% 812
chr12 218308 0.16% 792
chr13 94872 0.08% 342
chr14 149418 0.14% 547
chr15 141273 0.14% 507
chr16 225646 0.25% 800
chr17 269107 0.32% 975
chr18 78993 0.10% 285
chr19 250160 0.43% 904
chr20 133487 0.21% 481
chr21 69823 0.15% 247
chr22 113112 0.22% 409
chrX 71416 0.05% 261
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 16101 3 1104 276.83 304
global segment-length histogram

Files

Filename Size md5
ENCFF002CIA.bed.gz 302.9 KB 9baa9ee4a9b96d7251adcafd95b2c5be
ENCFF002CIA.tabix.bed.gz 244.89 KB 6aece8476c3e7e5f89833d353f197ebe
ENCFF002CIA.tabix.bed.gz.tbi 112.45 KB f7e0a1ffc9a607c55ab2209ab572b3e3
genomic_resource.yaml 1.48 KB 4d94ccfec70bbc2563841301f56f2570
statistics/