TF_ChIP-seq_ENCSR000BQN
TF_ChIP-seq ENCSR000BQN [biosample_summary="Homo sapiens PFSK-1" and target="TAF1"]
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| Id: | TF_ChIP-seq/ENCSR000BQN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BQN [biosamplesummary="Homo sapiens PFSK-1" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN253NNX|/analyses/ENCAN253NNX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF741GJT|/files/ENCFF741GJT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 5010387 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF070SAY|/files/ENCFF070SAY/}, {ENCFF750BVX|/files/ENCFF750BVX/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 5.15. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF453DNJ|/files/ENCFF453DNJ/}, {ENCFF389PDP|/files/ENCFF389PDP/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.34 and a self consistency ratio of 5.15. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BQN | float |
TF_ChIP-seq_ENCSR000BQN |
TF_ChIP-seq ENCSR000BQN [biosample_summary="Homo sapiens PFSK-1" and target="TAF1"]
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[7.27, 348] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF070SAY.bed.gz | 270.51 KB | 1a8073f1f951fdd5f174cb43a8608abf |
| ENCFF070SAY.bed.gz.dvc | 100.0 B | 399a068d2b506d7797cac3567435c5ce |
| ENCFF070SAY.tabix.bed.gz | 207.89 KB | 01eaa03f88d084c7caaceec97fc607a3 |
| ENCFF070SAY.tabix.bed.gz.dvc | 106.0 B | 60a9aa191fb2a9d99b7ed86ec1a3a8e3 |
| ENCFF070SAY.tabix.bed.gz.tbi | 97.68 KB | dd1d9a03bf2b361e07fbfde82c0ffb8f |
| ENCFF070SAY.tabix.bed.gz.tbi.dvc | 110.0 B | 5182dc5fb008cb9eb48511da44e55a5d |
| genomic_resource.yaml | 2.98 KB | eb50e85c3b2bf264b1cf9ee0528dd495 |
| genomic_resource_original.yaml | 2.88 KB | b74f332495491375de4ed2ebe66a5eee |
| statistics/ |