Resource

Id TF_ChIP-seq/ENCSR000BQMcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQM [biosample_summary="Homo sapiens GM12878" and target="PML"]
Description
Labels
  • accession: ENCSR000BQM
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:52:44.532799-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: PML

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQM float

TF_ChIP-seq_ENCSR000BQM

TF_ChIP-seq ENCSR000BQM [biosample_summary="Homo sapiens GM12878" and target="PML"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQM [41, 716]
n
8,081,746
mean
67.5
sd
40.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 80817460.25% 17893
chr1 785006 0.32% 1780
chr2 597273 0.25% 1373
chr3 505919 0.26% 1080
chr4 324017 0.17% 699
chr5 429535 0.24% 957
chr6 595622 0.35% 1275
chr7 394787 0.25% 854
chr8 320061 0.22% 684
chr9 300447 0.22% 674
chr10 336180 0.25% 734
chr11 401973 0.30% 925
chr12 455165 0.34% 1008
chr13 164902 0.14% 358
chr14 289893 0.27% 666
chr15 246540 0.24% 539
chr16 305051 0.34% 690
chr17 420012 0.50% 933
chr18 136717 0.17% 293
chr19 473427 0.81% 1102
chr20 186189 0.29% 404
chr21 96366 0.21% 196
chr22 150206 0.30% 335
chrX 166458 0.11% 334
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17893 1 5013 451.67 426
global segment-length histogram

Files

Filename Size md5
ENCFF002CHM.bed.gz 334.16 KB 5d8b9a58042b39f6cf37b90df6bf035c
ENCFF002CHM.tabix.bed.gz 272.2 KB 6888ef5c20af3f6ac778c8b8668e7dd1
ENCFF002CHM.tabix.bed.gz.tbi 108.29 KB 6ae39c27b2ccdd68821547af935a1ce3
genomic_resource.yaml 1.47 KB fab5f9e24178d5dab182c33e2f222bca
statistics/