Resource

Id TF_ChIP-seq/ENCSR000BQLcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQL [biosample_summary="Homo sapiens GM12878" and target="NFATC1"]
Description
Labels
  • accession: ENCSR000BQL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:52:43.897012-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: NFATC1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQL float

TF_ChIP-seq_ENCSR000BQL
TF_ChIP-seq ENCSR000BQL [biosample_summary="Homo sapiens GM12878" and target="NFATC1"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQL [9.36, 419]
n
7,286,532
mean
49.6
sd
26.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72865320.23% 17517
chr1 654441 0.26% 1593
chr2 618663 0.26% 1520
chr3 482299 0.24% 1135
chr4 344178 0.18% 818
chr5 420772 0.23% 1009
chr6 552259 0.32% 1352
chr7 377548 0.24% 893
chr8 321811 0.22% 764
chr9 271191 0.20% 640
chr10 325201 0.24% 766
chr11 351390 0.26% 845
chr12 418354 0.31% 1033
chr13 182834 0.16% 442
chr14 235681 0.22% 577
chr15 185122 0.18% 433
chr16 252090 0.28% 623
chr17 355151 0.43% 858
chr18 145908 0.18% 346
chr19 272805 0.47% 652
chr20 185204 0.29% 451
chr21 109641 0.23% 248
chr22 109492 0.22% 258
chrX 114497 0.07% 261
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 17517 1 4380 415.97 560
global segment-length histogram

Files

Filename Size md5
ENCFF409QJU.bed.gz 255.73 KB 06580d3142d49ee39bae07fed781c8f3
ENCFF409QJU.tabix.bed.gz 203.92 KB d5e22fcfcfe477f87b68d2ca71ac1674
ENCFF409QJU.tabix.bed.gz.tbi 97.37 KB f5d1e74cd953a804bad765d3e72f6693
genomic_resource.yaml 1.35 KB d163681b2d52de718967aaa598a7f7f2
statistics/