Resource

Id TF_ChIP-seq/ENCSR000BQKcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BQK [biosample_summary="Homo sapiens GM12878" and target="ATF2"]
Description
Labels
  • accession: ENCSR000BQK
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T16:52:43.689951-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BQK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: ATF2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BQK float

TF_ChIP-seq_ENCSR000BQK
TF_ChIP-seq ENCSR000BQK [biosample_summary="Homo sapiens GM12878" and target="ATF2"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BQK [6.56, 533]
n
11,157,707
mean
48.6
sd
35.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 111577070.35% 30318
chr1 962943 0.39% 2592
chr2 1004801 0.41% 2729
chr3 858124 0.43% 2302
chr4 617954 0.32% 1671
chr5 699956 0.39% 1927
chr6 933599 0.55% 2542
chr7 581619 0.37% 1554
chr8 549074 0.38% 1504
chr9 353810 0.26% 933
chr10 585620 0.44% 1632
chr11 470807 0.35% 1261
chr12 639573 0.48% 1804
chr13 322224 0.28% 866
chr14 381358 0.36% 1074
chr15 320918 0.31% 892
chr16 280381 0.31% 755
chr17 382266 0.46% 1037
chr18 249705 0.31% 684
chr19 216492 0.37% 571
chr20 249560 0.39% 666
chr21 123038 0.26% 346
chr22 118181 0.23% 307
chrX 255704 0.16% 669
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30318 1 1597 368.02 374
global segment-length histogram

Files

Filename Size md5
ENCFF973FKS.bed.gz 466.31 KB 3fbcdf35e8c83d557eca5172716f4dee
ENCFF973FKS.tabix.bed.gz 349.61 KB a153080d5214f2543a36822d8f4dde04
ENCFF973FKS.tabix.bed.gz.tbi 144.8 KB 00fba5f1e91bf9e9360aa2a4c7458618
genomic_resource.yaml 1.56 KB 4ebdbca0d87aae96c4b37175812f4740
statistics/