TF_ChIP-seq_ENCSR000BQG
TF_ChIP-seq ENCSR000BQG [biosample_summary="Homo sapiens H1" and target="SP2"]
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| Id: | TF_ChIP-seq/ENCSR000BQG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BQG [biosamplesummary="Homo sapiens H1" and target="SP2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN940GKW|/analyses/ENCAN940GKW/} has in progress subobject document {f6f2231d-01aa-4382-bbe6-719ef909ec1b|/documents/f6f2231d-01aa-4382-bbe6-719ef909ec1b/} audit_internal_action: Released analysis {ENCAN940GKW|/analyses/ENCAN940GKW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF985PIZ|/files/ENCFF985PIZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF985PIZ|/files/ENCFF985PIZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.30. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF054MMZ|/files/ENCFF054MMZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF054MMZ|/files/ENCFF054MMZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BQG | float |
TF_ChIP-seq_ENCSR000BQG |
TF_ChIP-seq ENCSR000BQG [biosample_summary="Homo sapiens H1" and target="SP2"]
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[6.18, 550] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF309QRC.bed.gz | 40.79 KB | 311e63beaf63314eefd174f6a749b8c3 |
| ENCFF309QRC.bed.gz.dvc | 99.0 B | 02b5a1b8a48d613b7569b9f30d228875 |
| ENCFF309QRC.tabix.bed.gz | 30.29 KB | 0f66781b26663b1cea16b3fc67a7fb18 |
| ENCFF309QRC.tabix.bed.gz.dvc | 105.0 B | e4ff289b670a35683e83f2c02901bfc9 |
| ENCFF309QRC.tabix.bed.gz.tbi | 26.98 KB | 3216ac91d9331f00262f8f7dfb13da98 |
| ENCFF309QRC.tabix.bed.gz.tbi.dvc | 109.0 B | 7b7138acb396a7d8f15b9f46f50d7aa1 |
| genomic_resource.yaml | 4.17 KB | d88ec7d9f47ea596040c9e4ddfab9d37 |
| genomic_resource_original.yaml | 4.08 KB | f84f0d140ee40ded7d367c3255e12365 |
| statistics/ |