TF_ChIP-seq_ENCSR000BQB
TF_ChIP-seq ENCSR000BQB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="POLR2A"]
×
| Id: | TF_ChIP-seq/ENCSR000BQB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BQB [biosamplesummary="Homo sapiens endothelial cell of umbilical vein newborn" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN143IAM|/analyses/ENCAN143IAM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF095RWQ|/files/ENCFF095RWQ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10054009 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF095RWQ|/files/ENCFF095RWQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF095RWQ|/files/ENCFF095RWQ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.78. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BQB | float |
TF_ChIP-seq_ENCSR000BQB |
TF_ChIP-seq ENCSR000BQB [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="POLR2A"]
|
|
[8.31, 493] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF876VZQ.bed.gz | 491.94 KB | 701ca68b5efae47fa8d14458cd27fdf3 |
| ENCFF876VZQ.bed.gz.dvc | 100.0 B | 2901adac0a619762bb37088c824ef6e6 |
| ENCFF876VZQ.tabix.bed.gz | 413.42 KB | aa236c665b391584e7b744666a5ee1bd |
| ENCFF876VZQ.tabix.bed.gz.dvc | 106.0 B | ec52e95db02ab16a78cae4c3eed3b93b |
| ENCFF876VZQ.tabix.bed.gz.tbi | 135.52 KB | 5a6da8e444209e69358718e42ecf4d17 |
| ENCFF876VZQ.tabix.bed.gz.tbi.dvc | 110.0 B | 39a8b69d6e09c62bdc5b7fb1d69037bd |
| genomic_resource.yaml | 3.35 KB | 2b4f287bf39801ff5c82124d0997fd88 |
| genomic_resource_original.yaml | 3.22 KB | 738ead7092455e25d137b6ec51a6af0c |
| statistics/ |