Resource

Id TF_ChIP-seq/ENCSR000BPAcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BPA [biosample_summary="Homo sapiens SK-N-SH" and target="POLR2AphosphoS5"]
Description
Labels
  • accession: ENCSR000BPA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003072/
  • biosample_summary: Homo sapiens SK-N-SH
  • date_created: 2013-09-13T15:57:11.022323-08:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BPA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: POLR2AphosphoS5

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BPA float

TF_ChIP-seq_ENCSR000BPA
TF_ChIP-seq ENCSR000BPA [biosample_summary="Homo sapiens SK-N-SH" and target="POLR2AphosphoS5"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BPA [8.13, 475]
n
12,159,673
mean
57.3
sd
42.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 121596730.38% 39341
chr1 1184739 0.48% 3835
chr2 974723 0.40% 3127
chr3 770142 0.39% 2486
chr4 515398 0.27% 1647
chr5 724658 0.40% 2365
chr6 677710 0.40% 2105
chr7 864363 0.54% 2703
chr8 501243 0.35% 1638
chr9 491499 0.36% 1614
chr10 528056 0.39% 1685
chr11 645189 0.48% 2056
chr12 637984 0.48% 2108
chr13 282351 0.25% 895
chr14 340613 0.32% 1138
chr15 417625 0.41% 1360
chr16 369420 0.41% 1200
chr17 712721 0.86% 2306
chr18 200606 0.25% 653
chr19 490319 0.84% 1709
chr20 273041 0.42% 918
chr21 104550 0.22% 338
chr22 198636 0.39% 664
chrX 254087 0.16% 791
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39341 1 9280 309.08 296
global segment-length histogram

Files

Filename Size md5
ENCFF230DMM.bed.gz 610.27 KB 397c2bbc368f84d16938fb2e507d69fe
ENCFF230DMM.tabix.bed.gz 453.77 KB 965af2f07e5da85bf62bc96aa5a38a02
ENCFF230DMM.tabix.bed.gz.tbi 189.71 KB 5730481f56083e4c790ffe4af3cabca7
genomic_resource.yaml 1.89 KB 7190eae2a889a000668a15de6d0e1654
statistics/