Resource

Id TF_ChIP-seq/ENCSR000BOYcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BOY [biosample_summary="Homo sapiens PFSK-1" and target="SIN3A"]
Description
Labels
  • accession: ENCSR000BOY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005234/
  • biosample_summary: Homo sapiens PFSK-1
  • date_created: 2013-12-12T06:32:01.791984+00:00
  • date_released: 2012-02-29
  • doi: 10.17989/ENCSR000BOY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SIN3A

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BOY float

TF_ChIP-seq_ENCSR000BOY
TF_ChIP-seq ENCSR000BOY [biosample_summary="Homo sapiens PFSK-1" and target="SIN3A"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BOY [16.4, 281]
n
1,775,455
mean
25.9
sd
12.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 17754550.06% 5999
chr1 189573 0.08% 638
chr2 114516 0.05% 383
chr3 66600 0.03% 222
chr4 138035 0.07% 462
chr5 91986 0.05% 313
chr6 154699 0.09% 524
chr7 72847 0.05% 248
chr8 115478 0.08% 390
chr9 35100 0.03% 117
chr10 64487 0.05% 218
chr11 162764 0.12% 553
chr12 133106 0.10% 454
chr13 14700 0.01% 49
chr14 18420 0.02% 62
chr15 57208 0.06% 194
chr16 59715 0.07% 203
chr17 94670 0.11% 322
chr18 50100 0.06% 167
chr19 56297 0.10% 195
chr20 41054 0.06% 138
chr21 18300 0.04% 61
chr22 8700 0.02% 29
chrX 17100 0.01% 57
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5999 28 300 295.96 300
global segment-length histogram

Files

Filename Size md5
ENCFF002CNF.bed.gz 154.46 KB f8ca08987b4ff56ada3e74e6ff9af0ca
ENCFF002CNF.tabix.bed.gz 91.77 KB 87e3d03af310189734db4f268aa188cb
ENCFF002CNF.tabix.bed.gz.tbi 51.93 KB 5f5c151ee055ff3be7513633e5292a79
genomic_resource.yaml 1.48 KB 3f7e0822ae1d3ca1a6cc949056bc25a9
statistics/