TF_ChIP-seq_ENCSR000BNP
TF_ChIP-seq ENCSR000BNP [biosample_summary="Homo sapiens GM12878" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR000BNP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BNP [biosamplesummary="Homo sapiens GM12878" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN785XYH|/analyses/ENCAN785XYH/} has in progress subobject document {7dd7c605-dd9a-470a-8dd4-5ca735baca0f|/documents/7dd7c605-dd9a-470a-8dd4-5ca735baca0f/} audit_internal_action: Released analysis {ENCAN785XYH|/analyses/ENCAN785XYH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF676OVC|/files/ENCFF676OVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14333464 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF481OXC|/files/ENCFF481OXC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16919080 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF676OVC|/files/ENCFF676OVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF676OVC|/files/ENCFF676OVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BNP | float |
TF_ChIP-seq_ENCSR000BNP |
TF_ChIP-seq ENCSR000BNP [biosample_summary="Homo sapiens GM12878" and target="YY1"]
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[4.79, 511] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF446ZSX.bed.gz | 599.8 KB | 6942c2126255ef3a76a197ec93a3459e |
| ENCFF446ZSX.bed.gz.dvc | 100.0 B | 32bde1ec79afc5c5d512c76f48aed1a6 |
| ENCFF446ZSX.tabix.bed.gz | 451.76 KB | 8b7665c7df7d807e0a81d19001858399 |
| ENCFF446ZSX.tabix.bed.gz.dvc | 106.0 B | f2fc391eb24b48c0d56c32e6e8953784 |
| ENCFF446ZSX.tabix.bed.gz.tbi | 204.14 KB | cb1133c6f0814519ff67f21b1caa9ecc |
| ENCFF446ZSX.tabix.bed.gz.tbi.dvc | 110.0 B | 1b3701b80d4462febf9a4c0ccab65f4b |
| genomic_resource.yaml | 3.87 KB | 45747ea2890062764a11dd56418b42ef |
| genomic_resource_original.yaml | 3.78 KB | 5f6aa1451fe468d993ad04fc5537dc6c |
| statistics/ |