TF_ChIP-seq_ENCSR000BMR
TF_ChIP-seq ENCSR000BMR [biosample_summary="Homo sapiens K562" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000BMR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BMR [biosamplesummary="Homo sapiens K562" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF182YZG|/files/ENCFF182YZG/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN370MHQ|/analyses/ENCAN370MHQ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF140UJB|/files/ENCFF140UJB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19584370 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF140UJB|/files/ENCFF140UJB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF140UJB|/files/ENCFF140UJB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.44. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BMR | float |
TF_ChIP-seq_ENCSR000BMR |
TF_ChIP-seq ENCSR000BMR [biosample_summary="Homo sapiens K562" and target="POLR2A"]
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[8.79, 536] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF182YZG.bed.gz | 649.3 KB | b944c338bd7ff9253c3498707b9b6b12 |
| ENCFF182YZG.bed.gz.dvc | 100.0 B | af30fac4ad30a94eedba3f71130c0261 |
| ENCFF182YZG.tabix.bed.gz | 485.25 KB | 60adab9115e9dcfd53b492c966a4648c |
| ENCFF182YZG.tabix.bed.gz.dvc | 106.0 B | cb84241a5fc15f5396c9aafc2195ed90 |
| ENCFF182YZG.tabix.bed.gz.tbi | 144.37 KB | c6699016bd1ba4c370f85bf52ae963e9 |
| ENCFF182YZG.tabix.bed.gz.tbi.dvc | 110.0 B | d024c4e50625444e22e13496616a28ee |
| genomic_resource.yaml | 3.33 KB | 9d7275e0e4c5bd7684091ca7f37a84c8 |
| genomic_resource_original.yaml | 3.23 KB | 933f2062c72e7c5cdc7faf743dc8f9a5 |
| statistics/ |