TF_ChIP-seq_ENCSR000BMO
TF_ChIP-seq ENCSR000BMO [biosample_summary="Homo sapiens HepG2" and target="FOXA1"]
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| Id: | TF_ChIP-seq/ENCSR000BMO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BMO [biosamplesummary="Homo sapiens HepG2" and target="FOXA1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN054ANI|/analyses/ENCAN054ANI/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF152BOT|/files/ENCFF152BOT/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Processed alignments file {ENCFF332SRJ|/files/ENCFF332SRJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9008536 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF401YVR|/files/ENCFF401YVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15245612 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOXA1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF401YVR|/files/ENCFF401YVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF401YVR|/files/ENCFF401YVR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.18. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BMO | float |
TF_ChIP-seq_ENCSR000BMO |
TF_ChIP-seq ENCSR000BMO [biosample_summary="Homo sapiens HepG2" and target="FOXA1"]
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[3.71, 561] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF152BOT.bed.gz | 824.57 KB | 1faa3c11f60f906af93089660d86ec97 |
| ENCFF152BOT.bed.gz.dvc | 100.0 B | 65d03db9dc7597444c80f772b5706dd8 |
| ENCFF152BOT.tabix.bed.gz | 572.73 KB | 02390aa0da15ae51280cc71dfac1fc48 |
| ENCFF152BOT.tabix.bed.gz.dvc | 106.0 B | 8a5c777f1917ff44cabedf62c9d5b2ee |
| ENCFF152BOT.tabix.bed.gz.tbi | 265.42 KB | 898098e7886231f7d815d3314e9e8e9e |
| ENCFF152BOT.tabix.bed.gz.tbi.dvc | 110.0 B | 17ea820a32bb629669130068fca27098 |
| genomic_resource.yaml | 3.83 KB | 5ee1e454ce814a07ba974ced7817631e |
| genomic_resource_original.yaml | 3.74 KB | 028b37db92cb3e9b63e2fc102cfba022 |
| statistics/ |