TF_ChIP-seq_ENCSR000BMN
TF_ChIP-seq ENCSR000BMN [biosample_summary="Homo sapiens HeLa-S3" and target="REST"]
×
| Id: | TF_ChIP-seq/ENCSR000BMN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BMN [biosamplesummary="Homo sapiens HeLa-S3" and target="REST"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF208NUB|/files/ENCFF208NUB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN233HZE|/analyses/ENCAN233HZE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF355WAL|/files/ENCFF355WAL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9245837 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF754IAO|/files/ENCFF754IAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12326841 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF754IAO|/files/ENCFF754IAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF754IAO|/files/ENCFF754IAO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.20. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BMN | float |
TF_ChIP-seq_ENCSR000BMN |
TF_ChIP-seq ENCSR000BMN [biosample_summary="Homo sapiens HeLa-S3" and target="REST"]
|
|
[3.48, 523] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF208NUB.bed.gz | 193.63 KB | 3a0823a118dde65ca89700b16c8ff92a |
| ENCFF208NUB.bed.gz.dvc | 100.0 B | 027be2d379c3991ec4b1832c444b23b6 |
| ENCFF208NUB.tabix.bed.gz | 141.04 KB | 4e7936bf4009d121a227dd1769c6e5d0 |
| ENCFF208NUB.tabix.bed.gz.dvc | 106.0 B | 657d7481dc7fadf36a73a037dc43697b |
| ENCFF208NUB.tabix.bed.gz.tbi | 99.52 KB | 49358ee30e1b63a34cde05bdd6c887c8 |
| ENCFF208NUB.tabix.bed.gz.tbi.dvc | 110.0 B | 0555dcea208e9acac3a15cf03b864f94 |
| genomic_resource.yaml | 3.83 KB | 43223a0d4422661fda5508c68a7042bf |
| genomic_resource_original.yaml | 3.73 KB | b20590622fe3e8cbd43220286a70f726 |
| statistics/ |