TF_ChIP-seq_ENCSR000BMJ
TF_ChIP-seq ENCSR000BMJ [biosample_summary="Homo sapiens H1" and target="BCL11A"]
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| Id: | TF_ChIP-seq/ENCSR000BMJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BMJ [biosamplesummary="Homo sapiens H1" and target="BCL11A"] |
| Description: |
status: released biological_replicates: Rep 2 summary: output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN561OIG|/analyses/ENCAN561OIG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF638QOI|/files/ENCFF638QOI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11450937 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCL11A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF638QOI|/files/ENCFF638QOI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF638QOI|/files/ENCFF638QOI/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BMJ | float |
TF_ChIP-seq_ENCSR000BMJ |
TF_ChIP-seq ENCSR000BMJ [biosample_summary="Homo sapiens H1" and target="BCL11A"]
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[2.52, 59.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF697OBV.bed.gz | 13.41 KB | ff1abe30b9a68e0b8ddf0332ba500d19 |
| ENCFF697OBV.bed.gz.dvc | 99.0 B | 450a07aaa99247a10f6a4310a2fe560e |
| ENCFF697OBV.tabix.bed.gz | 9.73 KB | c94bc6d821fa0a39375d2ad17982e0d7 |
| ENCFF697OBV.tabix.bed.gz.dvc | 104.0 B | e9a05b2ddfd4ff755666d38432a5de69 |
| ENCFF697OBV.tabix.bed.gz.tbi | 13.17 KB | 38b174a34262a01671931b99febae4d8 |
| ENCFF697OBV.tabix.bed.gz.tbi.dvc | 109.0 B | 06a76766226c2ca11578d5e252e484e9 |
| genomic_resource.yaml | 3.14 KB | ac070eb5096b3bdacb3d7c58760d4631 |
| genomic_resource_original.yaml | 3.05 KB | 83437c5645a5b1146c033cb0775c21fa |
| statistics/ |