Resource

Id TF_ChIP-seq/ENCSR000BLVcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BLV [biosample_summary="Homo sapiens HepG2" and target="SRF"]
Description
Labels
  • accession: ENCSR000BLV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-09-13T16:01:43.420404-08:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BLV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: SRF

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BLV float

TF_ChIP-seq_ENCSR000BLV
TF_ChIP-seq ENCSR000BLV [biosample_summary="Homo sapiens HepG2" and target="SRF"]
 HISTOGRAM FOR TF_ChIP-seq_ENCSR000BLV [18.4, 465]
n
949,350
mean
48.5
sd
55.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 9493500.03% 5315
chr1 84330 0.03% 472
chr2 104353 0.04% 581
chr3 48616 0.02% 274
chr4 27826 0.01% 161
chr5 37843 0.02% 211
chr6 74801 0.04% 416
chr7 40520 0.03% 228
chr8 34254 0.02% 194
chr9 32977 0.02% 185
chr10 37155 0.03% 214
chr11 37736 0.03% 214
chr12 42384 0.03% 237
chr13 16395 0.01% 92
chr14 40542 0.04% 223
chr15 21885 0.02% 122
chr16 55970 0.06% 314
chr17 57649 0.07% 320
chr18 14997 0.02% 83
chr19 44921 0.08% 251
chr20 52770 0.08% 291
chr21 8929 0.02% 50
chr22 18017 0.04% 101
chrX 13928 0.01% 78
chrY 552 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 5315 42 325 178.62 184
global segment-length histogram

Files

Filename Size md5
ENCFF002CLD.bed.gz 131.25 KB 1760268ea624837539649926502c7bfc
ENCFF002CLD.tabix.bed.gz 81.81 KB 60b4bd06fd6c4eae9d2a2933e0f726f2
ENCFF002CLD.tabix.bed.gz.tbi 52.16 KB 8faa071712806c20e97d3e664419f86b
genomic_resource.yaml 1.47 KB e13efac53341a313d590f34628ef1645
statistics/