TF_ChIP-seq_ENCSR000BLT
TF_ChIP-seq ENCSR000BLT [biosample_summary="Homo sapiens GM12892" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR000BLT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BLT [biosamplesummary="Homo sapiens GM12892" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF072IHJ|/files/ENCFF072IHJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN734JTE|/analyses/ENCAN734JTE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF981GSU|/files/ENCFF981GSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11924299 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF627UME|/files/ENCFF627UME/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19851654 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF981GSU|/files/ENCFF981GSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF981GSU|/files/ENCFF981GSU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.75. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF627UME|/files/ENCFF627UME/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF627UME|/files/ENCFF627UME/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.47. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BLT | float |
TF_ChIP-seq_ENCSR000BLT |
TF_ChIP-seq ENCSR000BLT [biosample_summary="Homo sapiens GM12892" and target="YY1"]
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[4.73, 483] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF072IHJ.bed.gz | 346.84 KB | 6fa9471ae4d4ed4de71b3172b83c4efa |
| ENCFF072IHJ.bed.gz.dvc | 100.0 B | f3cb09661cf7a5a61570130d4f283779 |
| ENCFF072IHJ.tabix.bed.gz | 252.39 KB | 8a7817af26d771f42e3c1d06d1a2711b |
| ENCFF072IHJ.tabix.bed.gz.dvc | 106.0 B | e9f16edda542706c433e94d840d78b34 |
| ENCFF072IHJ.tabix.bed.gz.tbi | 129.49 KB | 772b10db10d1e10c3fdc39dc7094244c |
| ENCFF072IHJ.tabix.bed.gz.tbi.dvc | 110.0 B | 348032428b8fed986cb999c90d6f01d2 |
| genomic_resource.yaml | 5.12 KB | c700a1355ff577c1a26390f600559070 |
| genomic_resource_original.yaml | 5.02 KB | 89eb0a544813506c96f9e2f578c668c7 |
| statistics/ |