TF_ChIP-seq_ENCSR000BKQ
TF_ChIP-seq ENCSR000BKQ [biosample_summary="Homo sapiens K562" and target="ETS1"]
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| Id: | TF_ChIP-seq/ENCSR000BKQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BKQ [biosamplesummary="Homo sapiens K562" and target="ETS1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF461PRP|/files/ENCFF461PRP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN089TUA|/analyses/ENCAN089TUA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF401KIO|/files/ENCFF401KIO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12206346 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ETS1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF398SXO|/files/ENCFF398SXO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14461325 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ETS1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF401KIO|/files/ENCFF401KIO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF401KIO|/files/ENCFF401KIO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF398SXO|/files/ENCFF398SXO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF398SXO|/files/ENCFF398SXO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.15. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKQ | float |
TF_ChIP-seq_ENCSR000BKQ |
TF_ChIP-seq ENCSR000BKQ [biosample_summary="Homo sapiens K562" and target="ETS1"]
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[6.07, 394] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF461PRP.bed.gz | 201.87 KB | 709b8e71866304816aad277c92c8a529 |
| ENCFF461PRP.bed.gz.dvc | 100.0 B | 5a5a636a92e05d73750c9df15889653e |
| ENCFF461PRP.tabix.bed.gz | 153.26 KB | 7bcb2fa2ce18533643366e0c2c9c0b50 |
| ENCFF461PRP.tabix.bed.gz.dvc | 106.0 B | d3f05835f0688c4467d147d939d5cb95 |
| ENCFF461PRP.tabix.bed.gz.tbi | 73.56 KB | b2e750e84c6e5ac9559a20b1ac87f55d |
| ENCFF461PRP.tabix.bed.gz.tbi.dvc | 109.0 B | 647d279f5525fe3b95a87dc694d3bbed |
| genomic_resource.yaml | 5.12 KB | ffd361b04b33e2279f4b2eff929908a6 |
| genomic_resource_original.yaml | 5.02 KB | e408d747442120567098cefdabd41460 |
| statistics/ |