TF_ChIP-seq_ENCSR000BKH
TF_ChIP-seq ENCSR000BKH [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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| Id: | TF_ChIP-seq/ENCSR000BKH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BKH [biosamplesummary="Homo sapiens K562" and target="BCLAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN833BKA|/analyses/ENCAN833BKA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF477WUN|/files/ENCFF477WUN/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11132979 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCLAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF144FIS|/files/ENCFF144FIS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11735102 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCLAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF477WUN|/files/ENCFF477WUN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF477WUN|/files/ENCFF477WUN/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKH | float |
TF_ChIP-seq_ENCSR000BKH |
TF_ChIP-seq ENCSR000BKH [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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[4.99, 413] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF203EDM.bed.gz | 39.97 KB | 3946dde3684d502243421593940f2481 |
| ENCFF203EDM.bed.gz.dvc | 99.0 B | a9196ab53aaf58a5c7bad367fb59b7a5 |
| ENCFF203EDM.tabix.bed.gz | 28.54 KB | 23f7f5ee928f6309bc9a37dda37b21c6 |
| ENCFF203EDM.tabix.bed.gz.dvc | 105.0 B | 595292c73eda734c85d24b619b6ff07e |
| ENCFF203EDM.tabix.bed.gz.tbi | 22.8 KB | b3ba4d6e263c7e485bc34294f2bc51f6 |
| ENCFF203EDM.tabix.bed.gz.tbi.dvc | 109.0 B | 21bd7b15ed2b1ee1ba15b2a75c276f44 |
| genomic_resource.yaml | 3.64 KB | e2edca627eb54717d207214a3e3b2d70 |
| genomic_resource_original.yaml | 3.54 KB | 7a21e5e8a281e38edcb44e47f8bb0893 |
| statistics/ |