TF_ChIP-seq_ENCSR000BKF
TF_ChIP-seq ENCSR000BKF [biosample_summary="Homo sapiens K562" and target="ZBTB33"]
×
| Id: | TF_ChIP-seq/ENCSR000BKF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BKF [biosamplesummary="Homo sapiens K562" and target="ZBTB33"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN804EQY|/analyses/ENCAN804EQY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN804EQY|/analyses/ENCAN804EQY/} has in progress subobject document {a634758c-7f00-4ae0-81b3-05622d85dea3|/documents/a634758c-7f00-4ae0-81b3-05622d85dea3/} audit_warning: Processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19068431 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF866OZI|/files/ENCFF866OZI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13516538 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF953TQL|/files/ENCFF953TQL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.60. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKF | float |
TF_ChIP-seq_ENCSR000BKF |
TF_ChIP-seq ENCSR000BKF [biosample_summary="Homo sapiens K562" and target="ZBTB33"]
|
|
[4.85, 516] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF146GZZ.bed.gz | 60.55 KB | 8ac0ef9bb5256371dae70c5c42031e27 |
| ENCFF146GZZ.bed.gz.dvc | 99.0 B | e84d6dd747a3cb473b349257926a8f13 |
| ENCFF146GZZ.tabix.bed.gz | 40.62 KB | 62a045c157b1c8860e9dace94b9e4f9b |
| ENCFF146GZZ.tabix.bed.gz.dvc | 105.0 B | ba37b15955e96d4b99cab0cae6dc9749 |
| ENCFF146GZZ.tabix.bed.gz.tbi | 35.29 KB | becc63db72d5f7f9c7ba7315476fb758 |
| ENCFF146GZZ.tabix.bed.gz.tbi.dvc | 109.0 B | 5ccbc33c4b4a8feb7f27f3bdc7f2cab5 |
| genomic_resource.yaml | 3.88 KB | b311a99976bc821f9ec8c9c0e4590233 |
| genomic_resource_original.yaml | 3.79 KB | f37c25c71c03e14f9043d3adaa0c0ede |
| statistics/ |