TF_ChIP-seq_ENCSR000BKD
TF_ChIP-seq ENCSR000BKD [biosample_summary="Homo sapiens H1" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR000BKD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BKD [biosamplesummary="Homo sapiens H1" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN851SJM|/analyses/ENCAN851SJM/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF509GYP|/files/ENCFF509GYP/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF972SQO|/files/ENCFF972SQO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10196179 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF972SQO|/files/ENCFF972SQO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF972SQO|/files/ENCFF972SQO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.24. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF489EBO|/files/ENCFF489EBO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF489EBO|/files/ENCFF489EBO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.75. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKD | float |
TF_ChIP-seq_ENCSR000BKD |
TF_ChIP-seq ENCSR000BKD [biosample_summary="Homo sapiens H1" and target="YY1"]
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[5.62, 568] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF509GYP.bed.gz | 415.29 KB | 60a16f0e4b44bad618dd6a05511bde2d |
| ENCFF509GYP.bed.gz.dvc | 100.0 B | bfd156b103373822cea798392ebf5268 |
| ENCFF509GYP.tabix.bed.gz | 308.1 KB | e6e2421b824c6a802622043a65809bde |
| ENCFF509GYP.tabix.bed.gz.dvc | 106.0 B | 88ba0a9c4afe4e846cb9ec884bde8e14 |
| ENCFF509GYP.tabix.bed.gz.tbi | 176.63 KB | 4eea318f9d1ce6852be0951d34817344 |
| ENCFF509GYP.tabix.bed.gz.tbi.dvc | 110.0 B | 01d6f129170fd89ec61abe079a2fb670 |
| genomic_resource.yaml | 4.61 KB | 817b53c12e4c73e731b841043f540382 |
| genomic_resource_original.yaml | 4.52 KB | ad80aaf6f7d21df4130583b67f6a2a0b |
| statistics/ |