TF_ChIP-seq_ENCSR000BKC
TF_ChIP-seq ENCSR000BKC [biosample_summary="Homo sapiens H1" and target="ATF3"]
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| Id: | TF_ChIP-seq/ENCSR000BKC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BKC [biosamplesummary="Homo sapiens H1" and target="ATF3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN287LIV|/analyses/ENCAN287LIV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN287LIV|/analyses/ENCAN287LIV/} has in progress subobject document {4c06f462-a5a8-42d1-8dc8-1b6d2fbf69be|/documents/4c06f462-a5a8-42d1-8dc8-1b6d2fbf69be/} audit_not_compliant: Processed alignments file {ENCFF149WSI|/files/ENCFF149WSI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9501309 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF3-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF061OVT|/files/ENCFF061OVT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12430546 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ATF3-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF061OVT|/files/ENCFF061OVT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF061OVT|/files/ENCFF061OVT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BKC | float |
TF_ChIP-seq_ENCSR000BKC |
TF_ChIP-seq ENCSR000BKC [biosample_summary="Homo sapiens H1" and target="ATF3"]
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[3.64, 438] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF440FTA.bed.gz | 89.77 KB | fe0c85937f9235e167d4fc3b2f6650ab |
| ENCFF440FTA.bed.gz.dvc | 99.0 B | ba2d5728f5a628419fc057dd12e4bde9 |
| ENCFF440FTA.tabix.bed.gz | 66.16 KB | e639a38c10b3d86f297ecd4157940036 |
| ENCFF440FTA.tabix.bed.gz.dvc | 105.0 B | a96ad403cfe271ad207dfddc13ceab32 |
| ENCFF440FTA.tabix.bed.gz.tbi | 55.07 KB | bc845b4024ccc40b3ab506f8b7ab4ec2 |
| ENCFF440FTA.tabix.bed.gz.tbi.dvc | 109.0 B | 0d70fc0b2d282355fcf8e46c9520e550 |
| genomic_resource.yaml | 3.87 KB | 464fff7337933d7da259d137ccca3045 |
| genomic_resource_original.yaml | 3.78 KB | b993389d59dc8a328f9b07871c746baa |
| statistics/ |