TF_ChIP-seq_ENCSR000BJN
TF_ChIP-seq ENCSR000BJN [biosample_summary="Homo sapiens HepG2" and target="TAF1"]
×
| Id: | TF_ChIP-seq/ENCSR000BJN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BJN [biosamplesummary="Homo sapiens HepG2" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN732UEB|/analyses/ENCAN732UEB/} has in progress subobject document {26a4534b-0e23-4d1a-9cd3-8221d2673f62|/documents/26a4534b-0e23-4d1a-9cd3-8221d2673f62/} audit_internal_action: Released analysis {ENCAN732UEB|/analyses/ENCAN732UEB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF580XZO|/files/ENCFF580XZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14523286 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF209JAF|/files/ENCFF209JAF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12703337 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF580XZO|/files/ENCFF580XZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF580XZO|/files/ENCFF580XZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF209JAF|/files/ENCFF209JAF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF209JAF|/files/ENCFF209JAF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.19. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BJN | float |
TF_ChIP-seq_ENCSR000BJN |
TF_ChIP-seq ENCSR000BJN [biosample_summary="Homo sapiens HepG2" and target="TAF1"]
|
|
[4.47, 383] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF032ZPF.bed.gz | 296.11 KB | 2989a8fd81ab6babd10fa92324a11abf |
| ENCFF032ZPF.bed.gz.dvc | 100.0 B | 506b524d1d547b3efa7d0b238ba16b79 |
| ENCFF032ZPF.tabix.bed.gz | 237.91 KB | db0c671ae5793eb9a5a490c33305805e |
| ENCFF032ZPF.tabix.bed.gz.dvc | 106.0 B | 05added141e38c0178be27e12e027bd7 |
| ENCFF032ZPF.tabix.bed.gz.tbi | 99.18 KB | 9baf7f237f1dfdf1a8941549b6936ef4 |
| ENCFF032ZPF.tabix.bed.gz.tbi.dvc | 110.0 B | 2431dccc8d6307d131d3cd99bc9ca82c |
| genomic_resource.yaml | 5.19 KB | 0b1e56745c3eaaad58d6945fa8233127 |
| genomic_resource_original.yaml | 5.09 KB | f4f4a04e7533efb7723d32a71f650ba3 |
| statistics/ |