type: position_score
table:
  filename: ENCFF200SDQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BJL
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BJL [biosample_summary="Homo sapiens HepG2" and target="REST"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BJL [biosample_summary="Homo sapiens HepG2" and target="REST"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN205EQV|/analyses/ENCAN205EQV/} has in progress\
    \ subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN205EQV|/analyses/ENCAN205EQV/}\
    \ has in progress subobject document {af208341-8e30-4dc8-9fc7-8b55c1431034|/documents/af208341-8e30-4dc8-9fc7-8b55c1431034/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF709XZV|/files/ENCFF709XZV/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14356898 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ REST-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF281XTY|/files/ENCFF281XTY/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 11306512 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting REST-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**: NRF (Non\
    \ Redundant Fraction) is equal to the result of the division of the number of\
    \ reads after duplicates removal by the total number of reads. An NRF value in\
    \ the range 0 - 0.5 is poor complexity, 0.5 - 0.8 is moderate complexity, and\
    \ > 0.8 high complexity. NRF value > 0.8 is recommended, but > 0.5 is acceptable.\
    \ ENCODE processed alignments file {ENCFF281XTY|/files/ENCFF281XTY/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with\
    \ NRF value of 0.79."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BJL
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HepG2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR000BJL
    date_created: '2013-09-13T15:59:16.235877-08:00'
    date_released: '2011-07-18'
    submitter_comment: ''
    target: REST
