Resource
| Id | TF_ChIP-seq/ENCSR000BJK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BJK [biosample_summary="Homo sapiens HepG2" and target="GABPA"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN775XYN|/analyses/ENCAN775XYN/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF500QLL|/files/ENCFF500QLL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10324024 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF802GPW|/files/ENCFF802GPW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14907596 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BJK | float |
TF_ChIP-seq_ENCSR000BJK |
TF_ChIP-seq ENCSR000BJK [biosample_summary="Homo sapiens HepG2" and target="GABPA"]
|
 |
[3.68, 501] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 2260824 | 0.07% | 8376 |
| chr1 | 204071 | 0.08% | 749 |
| chr2 | 184667 | 0.08% | 690 |
| chr3 | 103115 | 0.05% | 387 |
| chr4 | 60765 | 0.03% | 231 |
| chr5 | 79809 | 0.04% | 295 |
| chr6 | 116078 | 0.07% | 419 |
| chr7 | 95949 | 0.06% | 365 |
| chr8 | 66309 | 0.05% | 242 |
| chr9 | 75543 | 0.05% | 279 |
| chr10 | 74535 | 0.06% | 276 |
| chr11 | 112792 | 0.08% | 411 |
| chr12 | 110322 | 0.08% | 406 |
| chr13 | 38150 | 0.03% | 140 |
| chr14 | 74346 | 0.07% | 280 |
| chr15 | 65408 | 0.06% | 245 |
| chr16 | 144408 | 0.16% | 539 |
| chr17 | 160694 | 0.19% | 586 |
| chr18 | 28907 | 0.04% | 109 |
| chr19 | 213267 | 0.36% | 791 |
| chr20 | 118424 | 0.18% | 438 |
| chr21 | 24685 | 0.05% | 87 |
| chr22 | 65285 | 0.13% | 238 |
| chrX | 42493 | 0.03% | 169 |
| chrY | 802 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 8376 | 2 | 921 | 269.92 | 300 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF065EPE.bed.gz | 142.2 KB | fb8bebc60129799408d9866b62709e23 |
| ENCFF065EPE.tabix.bed.gz | 99.97 KB | 6375e22b0f98268eb596df9808bdf11f |
| ENCFF065EPE.tabix.bed.gz.tbi | 67.84 KB | 6b427ae5d7a22029137eddcbe7480aaa |
| genomic_resource.yaml | 2.33 KB | f2e06e3b28e6ff9e5dc0fa09e775470e |
| statistics/ |