TF_ChIP-seq_ENCSR000BIT
TF_ChIP-seq ENCSR000BIT [biosample_summary="Homo sapiens H1" and target="TCF12"]
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| Id: | TF_ChIP-seq/ENCSR000BIT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BIT [biosamplesummary="Homo sapiens H1" and target="TCF12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF740HPV|/files/ENCFF740HPV/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN215NEP|/analyses/ENCAN215NEP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF421BPV|/files/ENCFF421BPV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9906036 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF269TPC|/files/ENCFF269TPC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10619776 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF421BPV|/files/ENCFF421BPV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF421BPV|/files/ENCFF421BPV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIT | float |
TF_ChIP-seq_ENCSR000BIT |
TF_ChIP-seq ENCSR000BIT [biosample_summary="Homo sapiens H1" and target="TCF12"]
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[3.56, 351] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF740HPV.bed.gz | 196.59 KB | c24e29c6e2b2b45cbf81d057dd2e7e56 |
| ENCFF740HPV.bed.gz.dvc | 100.0 B | 71a21b5e488972f1d813504e3aee08eb |
| ENCFF740HPV.tabix.bed.gz | 146.6 KB | 2b7a98ad2299a1e4381033f138d876db |
| ENCFF740HPV.tabix.bed.gz.dvc | 106.0 B | faacb58667921f7d03928838a2f65a7d |
| ENCFF740HPV.tabix.bed.gz.tbi | 100.66 KB | 62da206f9ff84c42715d78a187fd4474 |
| ENCFF740HPV.tabix.bed.gz.tbi.dvc | 110.0 B | 5703a3e4165dfa873fe26e231fec4380 |
| genomic_resource.yaml | 3.82 KB | 6bbd07cb3ce46b4c7cb092e0c0589018 |
| genomic_resource_original.yaml | 3.73 KB | 017f9f9d5bd4011b6da14923d3cc47b1 |
| statistics/ |