TF_ChIP-seq_ENCSR000BIS
TF_ChIP-seq ENCSR000BIS [biosample_summary="Homo sapiens H1" and target="SIN3A"]
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| Id: | TF_ChIP-seq/ENCSR000BIS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BIS [biosamplesummary="Homo sapiens H1" and target="SIN3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN729GRC|/analyses/ENCAN729GRC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF036SLY|/files/ENCFF036SLY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11065222 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SIN3A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF655DGW|/files/ENCFF655DGW/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14035468 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SIN3A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF655DGW|/files/ENCFF655DGW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF655DGW|/files/ENCFF655DGW/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.12. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIS | float |
TF_ChIP-seq_ENCSR000BIS |
TF_ChIP-seq ENCSR000BIS [biosample_summary="Homo sapiens H1" and target="SIN3A"]
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[4.32, 390] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF820OMK.bed.gz | 249.91 KB | 23a7613b25af81f5dbf2037400bca991 |
| ENCFF820OMK.bed.gz.dvc | 100.0 B | eb9a0dd43d9e31d7e9d36867971a4aa3 |
| ENCFF820OMK.tabix.bed.gz | 177.92 KB | 92baae51a474b7d80ea12250dcba4990 |
| ENCFF820OMK.tabix.bed.gz.dvc | 106.0 B | c9f2fc468a4b2e812d1f7d296792e610 |
| ENCFF820OMK.tabix.bed.gz.tbi | 94.25 KB | 7676d5402e825e941f4f216d46a6de02 |
| ENCFF820OMK.tabix.bed.gz.tbi.dvc | 109.0 B | f462633f82f5dc9ebc680659c520771a |
| genomic_resource.yaml | 3.62 KB | bdcda30faa3fadb7a8187e6cbebece94 |
| genomic_resource_original.yaml | 3.53 KB | 5d2ed67d0d57cdfdf65ff8fd46ea26b0 |
| statistics/ |