TF_ChIP-seq_ENCSR000BIQ
TF_ChIP-seq ENCSR000BIQ [biosample_summary="Homo sapiens H1" and target="SIX5"]
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| Id: | TF_ChIP-seq/ENCSR000BIQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BIQ [biosamplesummary="Homo sapiens H1" and target="SIX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF644BNN|/files/ENCFF644BNN/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN691IYV|/analyses/ENCAN691IYV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF892YBG|/files/ENCFF892YBG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10956008 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SIX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF588EKB|/files/ENCFF588EKB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13205788 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SIX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF588EKB|/files/ENCFF588EKB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF588EKB|/files/ENCFF588EKB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 5.17. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIQ | float |
TF_ChIP-seq_ENCSR000BIQ |
TF_ChIP-seq ENCSR000BIQ [biosample_summary="Homo sapiens H1" and target="SIX5"]
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[3.9, 454] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF644BNN.bed.gz | 56.85 KB | ef33160da1dbc7d345f7eb36065717f9 |
| ENCFF644BNN.bed.gz.dvc | 99.0 B | 46debf4ec2ee7d40169af12c4ac43cbd |
| ENCFF644BNN.tabix.bed.gz | 41.3 KB | 22e32f852430980d3e9e6eaf19673277 |
| ENCFF644BNN.tabix.bed.gz.dvc | 105.0 B | eb35d59c2a10b624cf7e47fa7c184dbf |
| ENCFF644BNN.tabix.bed.gz.tbi | 36.85 KB | 93ee0d8c94c192b416593740eeb76be0 |
| ENCFF644BNN.tabix.bed.gz.tbi.dvc | 109.0 B | 51fe502e310b8fa37f45848b923c0a7a |
| genomic_resource.yaml | 3.81 KB | d7c96b38e032d9f7882f889977ff41a6 |
| genomic_resource_original.yaml | 3.71 KB | 2b823e5fe713684e4d62baa6da3506f4 |
| statistics/ |