TF_ChIP-seq_ENCSR000BIP
TF_ChIP-seq ENCSR000BIP [biosample_summary="Homo sapiens H1" and target="BCL11A"]
×
| Id: | TF_ChIP-seq/ENCSR000BIP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BIP [biosamplesummary="Homo sapiens H1" and target="BCL11A"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN190YZL|/analyses/ENCAN190YZL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN190YZL|/analyses/ENCAN190YZL/} has in progress subobject document {f6e33a13-c45d-4172-ab08-9075c9b3d4fd|/documents/f6e33a13-c45d-4172-ab08-9075c9b3d4fd/} audit_warning: Processed alignments file {ENCFF816APW|/files/ENCFF816APW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13327439 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BCL11A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF816APW|/files/ENCFF816APW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF816APW|/files/ENCFF816APW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.16. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIP | float |
TF_ChIP-seq_ENCSR000BIP |
TF_ChIP-seq ENCSR000BIP [biosample_summary="Homo sapiens H1" and target="BCL11A"]
|
|
[3.66, 70.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF847HXU.bed.gz | 19.69 KB | caf70b2564697f300378b90ec7607867 |
| ENCFF847HXU.bed.gz.dvc | 99.0 B | f473872b6d9097d516818d49b4268c27 |
| ENCFF847HXU.tabix.bed.gz | 14.35 KB | 4f67a19bac0700a08c71b70f978432b4 |
| ENCFF847HXU.tabix.bed.gz.dvc | 105.0 B | 4cd6ed60f6c900397b63edf8889e218e |
| ENCFF847HXU.tabix.bed.gz.tbi | 17.25 KB | 96246c80f65a98bafc30a9fb3801fce8 |
| ENCFF847HXU.tabix.bed.gz.tbi.dvc | 109.0 B | 28bd1b348bd914907d2a8e4e4d0c0820 |
| genomic_resource.yaml | 3.37 KB | 869aa79eab76cdf9df2dd471ef9fcde7 |
| genomic_resource_original.yaml | 3.28 KB | 0daf4dda5b29359f0b350122e10e9905 |
| statistics/ |