TF_ChIP-seq_ENCSR000BIF
TF_ChIP-seq ENCSR000BIF [biosample_summary="Homo sapiens GM12878" and target="POLR2AphosphoS5"]
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| Id: | TF_ChIP-seq/ENCSR000BIF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BIF [biosamplesummary="Homo sapiens GM12878" and target="POLR2AphosphoS5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN307JIY|/analyses/ENCAN307JIY/} has in progress subobject document {f0815640-fdb3-48a8-a4a2-0341a1ae1930|/documents/f0815640-fdb3-48a8-a4a2-0341a1ae1930/} audit_internal_action: Released analysis {ENCAN307JIY|/analyses/ENCAN307JIY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF521NGV|/files/ENCFF521NGV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF521NGV|/files/ENCFF521NGV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIF | float |
TF_ChIP-seq_ENCSR000BIF |
TF_ChIP-seq ENCSR000BIF [biosample_summary="Homo sapiens GM12878" and target="POLR2AphosphoS5"]
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[8.64, 652] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF107UMF.bed.gz | 633.08 KB | 566c729848b6eac01970cbb117259986 |
| ENCFF107UMF.bed.gz.dvc | 100.0 B | eefc2d8058d9a6149eaa237cc6495b61 |
| ENCFF107UMF.tabix.bed.gz | 364.35 KB | 467ecd0459d9cd09ad537c140823e138 |
| ENCFF107UMF.tabix.bed.gz.dvc | 106.0 B | 4baf764433812887ba861ce91e299b26 |
| ENCFF107UMF.tabix.bed.gz.tbi | 120.31 KB | 0910679cb48fefe840d1fd7fc6f45277 |
| ENCFF107UMF.tabix.bed.gz.tbi.dvc | 110.0 B | 7b9128ecbbdbb388570a0a204160b3a0 |
| genomic_resource.yaml | 2.91 KB | b1efb644b9c1882352a1a49da3e40006 |
| genomic_resource_original.yaml | 2.8 KB | 582aef1e989917a4503419cfeec86192 |
| statistics/ |