Resource
| Id | TF_ChIP-seq/ENCSR000BIA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BIA [biosample_summary="Homo sapiens GM12892" and target="POLR2AphosphoS5"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN365IVG|/analyses/ENCAN365IVG/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF129ZZX|/files/ENCFF129ZZX/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: Processed alignments file {ENCFF449ZGE|/files/ENCFF449ZGE/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10681364 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF392PMX|/files/ENCFF392PMX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 15308844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BIA | float |
TF_ChIP-seq_ENCSR000BIA |
TF_ChIP-seq ENCSR000BIA [biosample_summary="Homo sapiens GM12892" and target="POLR2AphosphoS5"]
|
 |
[6.02, 574] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11586775 | 0.36% | 32390 |
| chr1 | 1128856 | 0.45% | 3211 |
| chr1_KI270713v1_random | 345 | 0.85% | 1 |
| chr2 | 806432 | 0.33% | 2235 |
| chr3 | 616619 | 0.31% | 1737 |
| chr4 | 349052 | 0.18% | 1004 |
| chr5 | 559836 | 0.31% | 1572 |
| chr6 | 680063 | 0.40% | 1866 |
| chr7 | 510429 | 0.32% | 1383 |
| chr8 | 381137 | 0.26% | 1048 |
| chr9 | 502366 | 0.36% | 1404 |
| chr10 | 465401 | 0.35% | 1310 |
| chr11 | 653910 | 0.48% | 1840 |
| chr12 | 622174 | 0.47% | 1759 |
| chr13 | 207686 | 0.18% | 610 |
| chr14 | 426545 | 0.40% | 1215 |
| chr15 | 354778 | 0.35% | 1005 |
| chr16 | 489748 | 0.54% | 1394 |
| chr17 | 747462 | 0.90% | 2014 |
| chr17_GL000205v2_random | 1775 | 0.96% | 8 |
| chr18 | 173623 | 0.22% | 488 |
| chr19 | 808895 | 1.38% | 2247 |
| chr20 | 321305 | 0.50% | 904 |
| chr21 | 148896 | 0.32% | 413 |
| chr22 | 310822 | 0.61% | 857 |
| chrEBV | 75828 | 44.13% | 194 |
| chrUn_GL000219v1 | 540 | 0.30% | 1 |
| chrX | 242252 | 0.16% | 670 |
| 3339 contigs with no values (185727143 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 32390 | 1 | 5358 | 357.73 | 330 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF129ZZX.bed.gz | 468.43 KB | cdd96fb754fb0c04e0c9ed49dd4be8d9 |
| ENCFF129ZZX.tabix.bed.gz | 369.5 KB | b3a0e737806dbbdc8b4f63fee7ef7751 |
| ENCFF129ZZX.tabix.bed.gz.tbi | 115.62 KB | 47a2be501adafff765b41a6ac9f0a298 |
| genomic_resource.yaml | 2.58 KB | 65b7e937871285aaa04b8c4283f0a860 |
| statistics/ |