TF_ChIP-seq_ENCSR000BHT
TF_ChIP-seq ENCSR000BHT [biosample_summary="Homo sapiens HeLa-S3" and target="TAF1"]
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| Id: | TF_ChIP-seq/ENCSR000BHT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHT [biosamplesummary="Homo sapiens HeLa-S3" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN031NQH|/analyses/ENCAN031NQH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF352NJI|/files/ENCFF352NJI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8887980 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF654DIS|/files/ENCFF654DIS/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13702469 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF654DIS|/files/ENCFF654DIS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF654DIS|/files/ENCFF654DIS/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.13. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHT | float |
TF_ChIP-seq_ENCSR000BHT |
TF_ChIP-seq ENCSR000BHT [biosample_summary="Homo sapiens HeLa-S3" and target="TAF1"]
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[3.87, 381] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF305QDB.bed.gz | 305.12 KB | 212dacefd25c5361bc1b2e5400f36d9c |
| ENCFF305QDB.bed.gz.dvc | 100.0 B | f6ce0b6a53786970c52ec751d078059b |
| ENCFF305QDB.tabix.bed.gz | 233.55 KB | 05c8d7715382e01e45bb83dcb2dcda96 |
| ENCFF305QDB.tabix.bed.gz.dvc | 106.0 B | 201049243ded9fc49662bd2fb9b19a3c |
| ENCFF305QDB.tabix.bed.gz.tbi | 105.46 KB | 5692491273f92f5e3c20a445c3e0532b |
| ENCFF305QDB.tabix.bed.gz.tbi.dvc | 110.0 B | bc43ad69a56394fcbe07d0a589c1d0dd |
| genomic_resource.yaml | 3.64 KB | 9655ddf13d77399173f7544d0db083f0 |
| genomic_resource_original.yaml | 3.54 KB | ceaffc12cd884c3d7d555025815d6adf |
| statistics/ |