Resource
| Id | TF_ChIP-seq/ENCSR000BHS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHS [biosample_summary="Homo sapiens HeLa-S3" and target="GABPA"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN407YLC|/analyses/ENCAN407YLC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF820GCU|/files/ENCFF820GCU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11928392 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF813EGR|/files/ENCFF813EGR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14719883 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting GABPA-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHS | float |
TF_ChIP-seq_ENCSR000BHS |
TF_ChIP-seq ENCSR000BHS [biosample_summary="Homo sapiens HeLa-S3" and target="GABPA"]
|
 |
[4.39, 460] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 1806104 | 0.06% | 7702 |
| chr1 | 180866 | 0.07% | 763 |
| chr2 | 101573 | 0.04% | 439 |
| chr3 | 108051 | 0.05% | 466 |
| chr4 | 41112 | 0.02% | 185 |
| chr5 | 101433 | 0.06% | 425 |
| chr6 | 81880 | 0.05% | 355 |
| chr7 | 73252 | 0.05% | 317 |
| chr8 | 73735 | 0.05% | 310 |
| chr9 | 98406 | 0.07% | 412 |
| chr10 | 67150 | 0.05% | 279 |
| chr11 | 126729 | 0.09% | 533 |
| chr12 | 106570 | 0.08% | 449 |
| chr13 | 25017 | 0.02% | 104 |
| chr14 | 57271 | 0.05% | 244 |
| chr15 | 76906 | 0.08% | 326 |
| chr16 | 84274 | 0.09% | 363 |
| chr17 | 101397 | 0.12% | 439 |
| chr18 | 22316 | 0.03% | 96 |
| chr19 | 123323 | 0.21% | 539 |
| chr20 | 62058 | 0.10% | 262 |
| chr21 | 16885 | 0.04% | 70 |
| chr22 | 28427 | 0.06% | 123 |
| chrX | 47473 | 0.03% | 203 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 7702 | 2 | 608 | 234.5 | 256 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF793BVO.bed.gz | 130.93 KB | 3b852f9fa019239b89ab2631c48a10a8 |
| ENCFF793BVO.tabix.bed.gz | 91.45 KB | 8c6fe32d218ae8fc61faf20c3b893143 |
| ENCFF793BVO.tabix.bed.gz.tbi | 65.03 KB | 54bf8847a5622928b0463c8676237395 |
| genomic_resource.yaml | 2.34 KB | de9bcd22db4a8458ca7f8fe240308661 |
| statistics/ |