TF_ChIP-seq_ENCSR000BHP
TF_ChIP-seq ENCSR000BHP [biosample_summary="Homo sapiens HepG2" and target="FOSL2"]
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| Id: | TF_ChIP-seq/ENCSR000BHP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHP [biosamplesummary="Homo sapiens HepG2" and target="FOSL2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN976NZN|/analyses/ENCAN976NZN/} has in progress subobject document {042b6c79-51c8-4817-94e6-4514660b7ada|/documents/042b6c79-51c8-4817-94e6-4514660b7ada/} audit_internal_action: Released analysis {ENCAN976NZN|/analyses/ENCAN976NZN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF736RWO|/files/ENCFF736RWO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13005909 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting FOSL2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF401HSI|/files/ENCFF401HSI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.49 and a self consistency ratio of 2.93. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHP | float |
TF_ChIP-seq_ENCSR000BHP |
TF_ChIP-seq ENCSR000BHP [biosample_summary="Homo sapiens HepG2" and target="FOSL2"]
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[5.46, 469] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF401HSI.bed.gz | 533.4 KB | 9906c7bcb5b3614c8c774bae6d6ba47f |
| ENCFF401HSI.bed.gz.dvc | 100.0 B | 85630471f21b473b4efdda6c48549f1b |
| ENCFF401HSI.tabix.bed.gz | 357.32 KB | 66dd40d120c536b5f1e1f5fb152adc60 |
| ENCFF401HSI.tabix.bed.gz.dvc | 106.0 B | cb4b8ea2d2bf32902bdc95c89487a987 |
| ENCFF401HSI.tabix.bed.gz.tbi | 180.52 KB | 4ab847482b68480cf7f46a77a69bcf51 |
| ENCFF401HSI.tabix.bed.gz.tbi.dvc | 110.0 B | eb10b39444bc6e18ddd8210b1bf64996 |
| genomic_resource.yaml | 2.6 KB | 7ea498549e2239e4d944104b9231950e |
| genomic_resource_original.yaml | 2.51 KB | 142d16e503d596a4857c981f33ba073f |
| statistics/ |