TF_ChIP-seq_ENCSR000BHO
TF_ChIP-seq ENCSR000BHO [biosample_summary="Homo sapiens H1" and target="TAF1"]
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| Id: | TF_ChIP-seq/ENCSR000BHO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHO [biosamplesummary="Homo sapiens H1" and target="TAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN158UFH|/analyses/ENCAN158UFH/} has in progress subobject document {bb933163-2caf-490d-ac8f-5ad7030b0d41|/documents/bb933163-2caf-490d-ac8f-5ad7030b0d41/} audit_internal_action: Released analysis {ENCAN158UFH|/analyses/ENCAN158UFH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF702DIC|/files/ENCFF702DIC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11981013 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF426USV|/files/ENCFF426USV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11236939 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TAF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF426USV|/files/ENCFF426USV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF426USV|/files/ENCFF426USV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHO | float |
TF_ChIP-seq_ENCSR000BHO |
TF_ChIP-seq ENCSR000BHO [biosample_summary="Homo sapiens H1" and target="TAF1"]
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[4.1, 486] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF886BPR.bed.gz | 475.46 KB | 65ef109b2d64a505af73089d36711865 |
| ENCFF886BPR.bed.gz.dvc | 100.0 B | ad0c25b41fe5a105f95b2eb0ffa08a3a |
| ENCFF886BPR.tabix.bed.gz | 378.71 KB | 541bf68793fff90b40f8ed931b4f150f |
| ENCFF886BPR.tabix.bed.gz.dvc | 106.0 B | 0dd58e667e1d6edc07419142610fb087 |
| ENCFF886BPR.tabix.bed.gz.tbi | 145.29 KB | 75eb6e4ea031252c39b3c2847ce593bd |
| ENCFF886BPR.tabix.bed.gz.tbi.dvc | 110.0 B | 91d134f0b46363696607cdd725d0e706 |
| genomic_resource.yaml | 3.86 KB | 2c2d138d90883329ba93c2e8538e32ee |
| genomic_resource_original.yaml | 3.77 KB | 5193c4d288ce3d38dafaebbdb217aa10 |
| statistics/ |