TF_ChIP-seq_ENCSR000BHN
TF_ChIP-seq ENCSR000BHN [biosample_summary="Homo sapiens H1" and target="POLR2A"]
×
| Id: | TF_ChIP-seq/ENCSR000BHN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHN [biosamplesummary="Homo sapiens H1" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN723OCC|/analyses/ENCAN723OCC/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF526YGE|/files/ENCFF526YGE/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19855551 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF526YGE|/files/ENCFF526YGE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF526YGE|/files/ENCFF526YGE/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.82. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHN | float |
TF_ChIP-seq_ENCSR000BHN |
TF_ChIP-seq ENCSR000BHN [biosample_summary="Homo sapiens H1" and target="POLR2A"]
|
|
[9.16, 639] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF468LYO.bed.gz | 639.19 KB | ba4bfac04ac18497eed776496e712a6c |
| ENCFF468LYO.bed.gz.dvc | 100.0 B | b61e5e7d8367d1bc4df8da4676f51c66 |
| ENCFF468LYO.tabix.bed.gz | 483.4 KB | 01ee198fdaecccd867b2083a1bafac1d |
| ENCFF468LYO.tabix.bed.gz.dvc | 106.0 B | 805398798a4d205ee56fc0bf51fea53e |
| ENCFF468LYO.tabix.bed.gz.tbi | 150.0 KB | 2fd55fd019c7da97ed2f866d723c703f |
| ENCFF468LYO.tabix.bed.gz.tbi.dvc | 110.0 B | 71c2f7dcdc8c3d7dc05c814e8e94d3c3 |
| genomic_resource.yaml | 3.13 KB | 54e32ef55351eb90d96b900f7930f6cc |
| genomic_resource_original.yaml | 3.04 KB | 085895b0b40cef3f82beaeba9ea24a09 |
| statistics/ |