Resource
| Id | TF_ChIP-seq/ENCSR000BHM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHM [biosample_summary="Homo sapiens H1" and target="REST"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN410GHF|/analyses/ENCAN410GHF/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF403CAJ|/files/ENCFF403CAJ/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_not_compliant: Processed alignments file {ENCFF696GNV|/files/ENCFF696GNV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 9772844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting REST-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value in the range 0 - 0.5 is poor complexity, 0.5 - 0.8 is moderate complexity, and > 0.8 high complexity. NRF value > 0.8 is recommended, but > 0.5 is acceptable. ENCODE processed alignments file {ENCFF312WAT|/files/ENCFF312WAT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with NRF value of 0.80. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHM | float |
TF_ChIP-seq_ENCSR000BHM |
TF_ChIP-seq ENCSR000BHM [biosample_summary="Homo sapiens H1" and target="REST"]
|
 |
[4.59, 509] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4091278 | 0.13% | 16868 |
| chr1 | 391237 | 0.16% | 1596 |
| chr1_KI270713v1_random | 256 | 0.63% | 1 |
| chr2 | 306582 | 0.13% | 1270 |
| chr3 | 250140 | 0.13% | 1031 |
| chr4 | 169051 | 0.09% | 714 |
| chr5 | 229119 | 0.13% | 950 |
| chr6 | 218977 | 0.13% | 902 |
| chr7 | 197631 | 0.12% | 826 |
| chr8 | 191426 | 0.13% | 784 |
| chr9 | 172469 | 0.12% | 712 |
| chr10 | 199738 | 0.15% | 826 |
| chr11 | 234905 | 0.17% | 967 |
| chr12 | 196457 | 0.15% | 808 |
| chr13 | 85324 | 0.07% | 359 |
| chr14 | 132450 | 0.12% | 548 |
| chr15 | 131681 | 0.13% | 538 |
| chr16 | 165327 | 0.18% | 668 |
| chr17 | 197485 | 0.24% | 817 |
| chr18 | 92355 | 0.11% | 387 |
| chr19 | 172754 | 0.29% | 697 |
| chr20 | 142467 | 0.22% | 584 |
| chr21 | 34618 | 0.07% | 144 |
| chr22 | 97115 | 0.19% | 395 |
| chrM | 6343 | 38.28% | 26 |
| chrUn_KI270438v1 | 512 | 0.46% | 2 |
| chrX | 71556 | 0.05% | 303 |
| chrY | 3303 | 0.01% | 13 |
| 3339 contigs with no values (128907266 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 16868 | 1 | 758 | 242.55 | 256 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF403CAJ.bed.gz | 273.44 KB | 9f84b13c5eb67b5b9b2abc6d136f1972 |
| ENCFF403CAJ.tabix.bed.gz | 199.73 KB | 4c0221c6bda2e228ab9887f1c0d2d307 |
| ENCFF403CAJ.tabix.bed.gz.tbi | 128.54 KB | aa5b60a46483c435cf7bdcbc710ad062 |
| genomic_resource.yaml | 2.56 KB | 7351ed5ed8177ed8f7e80bea265ed0b1 |
| statistics/ |