Resource
| Id | TF_ChIP-seq/ENCSR000BHK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHK [biosample_summary="Homo sapiens GM12878" and target="SP1"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN280WLQ|/analyses/ENCAN280WLQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF720DEB|/files/ENCFF720DEB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15628169 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SP1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHK | float |
TF_ChIP-seq_ENCSR000BHK |
TF_ChIP-seq ENCSR000BHK [biosample_summary="Homo sapiens GM12878" and target="SP1"]
|
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[2.62, 284] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4346257 | 0.14% | 16361 |
| chr1 | 412504 | 0.17% | 1558 |
| chr2 | 293597 | 0.12% | 1096 |
| chr3 | 224871 | 0.11% | 845 |
| chr4 | 131233 | 0.07% | 487 |
| chr5 | 192130 | 0.11% | 719 |
| chr6 | 254011 | 0.15% | 959 |
| chr7 | 203377 | 0.13% | 778 |
| chr8 | 163470 | 0.11% | 622 |
| chr9 | 179284 | 0.13% | 669 |
| chr10 | 174161 | 0.13% | 652 |
| chr11 | 228976 | 0.17% | 876 |
| chr12 | 223978 | 0.17% | 850 |
| chr13 | 79702 | 0.07% | 292 |
| chr14 | 148725 | 0.14% | 543 |
| chr15 | 146389 | 0.14% | 565 |
| chr16 | 201268 | 0.22% | 755 |
| chr17 | 265796 | 0.32% | 994 |
| chr18 | 72337 | 0.09% | 262 |
| chr19 | 366579 | 0.63% | 1393 |
| chr20 | 122541 | 0.19% | 458 |
| chr21 | 49545 | 0.11% | 191 |
| chr22 | 114328 | 0.22% | 438 |
| chrX | 97455 | 0.06% | 359 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 16361 | 1 | 839 | 265.65 | 320 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF038AVV.bed.gz | 251.68 KB | fcca7ded01c938e22699c9a4cc127f56 |
| ENCFF038AVV.tabix.bed.gz | 189.84 KB | 1c9a38a77f5b5d0603702a06a1a66ea5 |
| ENCFF038AVV.tabix.bed.gz.tbi | 107.17 KB | e2bd59d95833e98ceefad82ccada3ab0 |
| genomic_resource.yaml | 1.83 KB | 44c3e4610905c4509adc131318b3f90b |
| statistics/ |
