TF_ChIP-seq_ENCSR000BHJ
TF_ChIP-seq ENCSR000BHJ [biosample_summary="Homo sapiens GM12878" and target="PAX5"]
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| Id: | TF_ChIP-seq/ENCSR000BHJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHJ [biosamplesummary="Homo sapiens GM12878" and target="PAX5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN209ANP|/analyses/ENCAN209ANP/} has in progress subobject document {37567562-ee4a-4f67-b6c8-389037a830dd|/documents/37567562-ee4a-4f67-b6c8-389037a830dd/} audit_internal_action: Released analysis {ENCAN209ANP|/analyses/ENCAN209ANP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF559TUN|/files/ENCFF559TUN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10372010 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting PAX5-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF192WNJ|/files/ENCFF192WNJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.15 and a self consistency ratio of 3.64. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHJ | float |
TF_ChIP-seq_ENCSR000BHJ |
TF_ChIP-seq ENCSR000BHJ [biosample_summary="Homo sapiens GM12878" and target="PAX5"]
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[4.66, 458] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF192WNJ.bed.gz | 387.54 KB | 866bbfb6db56f046bf0d0c0226b49277 |
| ENCFF192WNJ.bed.gz.dvc | 100.0 B | ddb22e03def2ce6583d579b96f1ff927 |
| ENCFF192WNJ.tabix.bed.gz | 293.2 KB | d49c255cc1a1c1713fae59044b26dcbb |
| ENCFF192WNJ.tabix.bed.gz.dvc | 106.0 B | 25909292fe962c17720fe17979b1055d |
| ENCFF192WNJ.tabix.bed.gz.tbi | 148.53 KB | fad0f5728ff3cde41a235f560a64306a |
| ENCFF192WNJ.tabix.bed.gz.tbi.dvc | 110.0 B | 55ef0a9ace90162bad54ef394ca36941 |
| genomic_resource.yaml | 2.6 KB | 8a2cf70d9063f0dfa42b447291a3cf19 |
| genomic_resource_original.yaml | 2.51 KB | 358f71b98956d7b01bace95b00a93f6c |
| statistics/ |