Resource
| Id | TF_ChIP-seq/ENCSR000BHC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BHC [biosample_summary="Homo sapiens GM12878" and target="ZBTB33"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN774WOE|/analyses/ENCAN774WOE/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF963NKM|/files/ENCFF963NKM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13216158 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF918QFL|/files/ENCFF918QFL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11838189 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZBTB33-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHC | float |
TF_ChIP-seq_ENCSR000BHC |
TF_ChIP-seq ENCSR000BHC [biosample_summary="Homo sapiens GM12878" and target="ZBTB33"]
|
 |
[4.12, 533] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 646372 | 0.02% | 2686 |
| chr1 | 62040 | 0.02% | 264 |
| chr2 | 39822 | 0.02% | 163 |
| chr3 | 30880 | 0.02% | 134 |
| chr4 | 19521 | 0.01% | 81 |
| chr5 | 33963 | 0.02% | 139 |
| chr6 | 48635 | 0.03% | 205 |
| chr7 | 26157 | 0.02% | 105 |
| chr8 | 21832 | 0.02% | 90 |
| chr9 | 23819 | 0.02% | 96 |
| chr10 | 29355 | 0.02% | 119 |
| chr11 | 29147 | 0.02% | 120 |
| chr12 | 35481 | 0.03% | 152 |
| chr13 | 13329 | 0.01% | 55 |
| chr14 | 20469 | 0.02% | 84 |
| chr15 | 21191 | 0.02% | 87 |
| chr16 | 26098 | 0.03% | 105 |
| chr17 | 48815 | 0.06% | 202 |
| chr18 | 8809 | 0.01% | 36 |
| chr19 | 47486 | 0.08% | 199 |
| chr20 | 18380 | 0.03% | 80 |
| chr21 | 10637 | 0.02% | 42 |
| chr22 | 16176 | 0.03% | 67 |
| chrX | 14330 | 0.01% | 61 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 2686 | 2 | 569 | 240.64 | 264 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF394CWJ.bed.gz | 43.73 KB | 1e1ef221679ba28140cc4103b3ab4bb6 |
| ENCFF394CWJ.tabix.bed.gz | 32.37 KB | 42202d29d3034497023c24e9c97601b6 |
| ENCFF394CWJ.tabix.bed.gz.tbi | 28.82 KB | f333a6de57f3fafbccfde41fd6879c84 |
| genomic_resource.yaml | 2.34 KB | 25f98ea7492317faf5d618324f682c5d |
| statistics/ |