TF_ChIP-seq_ENCSR000BHB
TF_ChIP-seq ENCSR000BHB [biosample_summary="Homo sapiens GM12878" and target="EP300"]
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| Id: | TF_ChIP-seq/ENCSR000BHB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BHB [biosamplesummary="Homo sapiens GM12878" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN604RWD|/analyses/ENCAN604RWD/} has in progress subobject document {4795c43b-6a44-4de7-9bf2-481e7ca44f02|/documents/4795c43b-6a44-4de7-9bf2-481e7ca44f02/} audit_internal_action: Released analysis {ENCAN604RWD|/analyses/ENCAN604RWD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF569VGS|/files/ENCFF569VGS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6278401 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF707DWY|/files/ENCFF707DWY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.09 and a self consistency ratio of 10.21. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF119SSU|/files/ENCFF119SSU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13614606 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BHB | float |
TF_ChIP-seq_ENCSR000BHB |
TF_ChIP-seq ENCSR000BHB [biosample_summary="Homo sapiens GM12878" and target="EP300"]
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[3.18, 187] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF707DWY.bed.gz | 74.88 KB | 9ceef50e6bbdf0d9113bdbb70a1aee43 |
| ENCFF707DWY.bed.gz.dvc | 99.0 B | 9039610416ca8b8b562fe8502d04c680 |
| ENCFF707DWY.tabix.bed.gz | 57.16 KB | df4f77ed2020e22f12938987f5d3e2a8 |
| ENCFF707DWY.tabix.bed.gz.dvc | 105.0 B | b9d83c86a93e07cb6f22c2046a8afe57 |
| ENCFF707DWY.tabix.bed.gz.tbi | 43.31 KB | ef94f0d01c131c217ec86015ac2d990c |
| ENCFF707DWY.tabix.bed.gz.tbi.dvc | 109.0 B | 8b19ff41de96ad6ff78e83ba10c1441f |
| genomic_resource.yaml | 3.13 KB | 4c3aad9ceba945a7da1ba6d0972c7e79 |
| genomic_resource_original.yaml | 3.03 KB | f0356506c422753b0aa1c5a24b9a7448 |
| statistics/ |