TF_ChIP-seq_ENCSR000BGZ
TF_ChIP-seq ENCSR000BGZ [biosample_summary="Homo sapiens GM12878" and target="TCF12"]
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| Id: | TF_ChIP-seq/ENCSR000BGZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BGZ [biosamplesummary="Homo sapiens GM12878" and target="TCF12"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF768VSH|/files/ENCFF768VSH/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN115JAP|/analyses/ENCAN115JAP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF101LKK|/files/ENCFF101LKK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11256226 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF291PCM|/files/ENCFF291PCM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 13227344 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting TCF12-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF101LKK|/files/ENCFF101LKK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF101LKK|/files/ENCFF101LKK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.63. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGZ | float |
TF_ChIP-seq_ENCSR000BGZ |
TF_ChIP-seq ENCSR000BGZ [biosample_summary="Homo sapiens GM12878" and target="TCF12"]
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[3.74, 390] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF768VSH.bed.gz | 446.97 KB | 9edaafcabc15b0befeed308e57dffb37 |
| ENCFF768VSH.bed.gz.dvc | 100.0 B | dc4439f1920912955fa3fcc7315023ff |
| ENCFF768VSH.tabix.bed.gz | 297.18 KB | 743e7f1ea7ff8abdec089da3cafdd59a |
| ENCFF768VSH.tabix.bed.gz.dvc | 106.0 B | 313e5d8ac04daa5e1cfc420e80b514b4 |
| ENCFF768VSH.tabix.bed.gz.tbi | 148.81 KB | 4420d6797c1044544037e939d682e25c |
| ENCFF768VSH.tabix.bed.gz.tbi.dvc | 110.0 B | d27a2968f75f05f2c2de062a0cffa949 |
| genomic_resource.yaml | 3.83 KB | 086f6338c330ed79e3cbb1d57a7a750f |
| genomic_resource_original.yaml | 3.73 KB | 0cf2dddbaab6c99c10a95885879a3fe2 |
| statistics/ |