TF_ChIP-seq_ENCSR000BGW
TF_ChIP-seq ENCSR000BGW [biosample_summary="Homo sapiens K562" and target="SPI1"]
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| Id: | TF_ChIP-seq/ENCSR000BGW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BGW [biosamplesummary="Homo sapiens K562" and target="SPI1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN069NTF|/analyses/ENCAN069NTF/} has in progress subobject document {90543621-7f30-4539-bcfe-a1532c449899|/documents/90543621-7f30-4539-bcfe-a1532c449899/} audit_internal_action: Released analysis {ENCAN069NTF|/analyses/ENCAN069NTF/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF041NKM|/files/ENCFF041NKM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13748262 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF410RKP|/files/ENCFF410RKP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12540391 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting SPI1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF888CKG|/files/ENCFF888CKG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.35 and a self consistency ratio of 2.66. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGW | float |
TF_ChIP-seq_ENCSR000BGW |
TF_ChIP-seq ENCSR000BGW [biosample_summary="Homo sapiens K562" and target="SPI1"]
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[4.25, 503] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF888CKG.bed.gz | 565.74 KB | a6a1ba063f289f92efba05b2b6901ad7 |
| ENCFF888CKG.bed.gz.dvc | 100.0 B | 3dc4b6abaff1887343901d401bc31b7c |
| ENCFF888CKG.tabix.bed.gz | 376.37 KB | 14bf4d51045119f9a830b271919a9e6f |
| ENCFF888CKG.tabix.bed.gz.dvc | 106.0 B | 4ac2d83f13f77f7e57d9e10e49dc0af4 |
| ENCFF888CKG.tabix.bed.gz.tbi | 208.63 KB | f64a24094823de46be0420d7bb00f2f1 |
| ENCFF888CKG.tabix.bed.gz.tbi.dvc | 110.0 B | 7febe512a6b4efca2747a8da3491b60c |
| genomic_resource.yaml | 3.09 KB | 6fd4ef06c2363707b75d162e329b8a5c |
| genomic_resource_original.yaml | 3.0 KB | 2fb2c3bab835222108210c326bbdd290 |
| statistics/ |