Resource

Id TF_ChIP-seq/ENCSR000BGUcontent_copy
Type position_score
Version 0
Summary TF_ChIP-seq ENCSR000BGU [biosample_summary="Homo sapiens GM12878" and target="EBF1"]
Description
Labels
  • accession: ENCSR000BGU
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-09-13T15:58:25.880581-08:00
  • date_released: 2011-07-18
  • doi: 10.17989/ENCSR000BGU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: EBF1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
TF_ChIP-seq_ENCSR000BGU float

TF_ChIP-seq_ENCSR000BGU

TF_ChIP-seq ENCSR000BGU [biosample_summary="Homo sapiens GM12878" and target="EBF1"]
HISTOGRAM FOR TF_ChIP-seq_ENCSR000BGU [4.45, 511]
n
10,072,814
mean
62.7
sd
69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100728140.31% 42710
chr1 970532 0.39% 4092
chr2 747001 0.31% 3191
chr3 615113 0.31% 2602
chr4 353694 0.19% 1497
chr5 544686 0.30% 2282
chr6 597664 0.35% 2553
chr7 464270 0.29% 1952
chr8 419713 0.29% 1771
chr9 414363 0.30% 1766
chr10 492692 0.37% 2077
chr11 510126 0.38% 2178
chr12 468039 0.35% 1988
chr13 210210 0.18% 894
chr14 362628 0.34% 1545
chr15 362938 0.36% 1546
chr16 426053 0.47% 1799
chr17 538773 0.65% 2290
chr18 203000 0.25% 866
chr19 463715 0.79% 1965
chr20 300941 0.47% 1263
chr21 123248 0.26% 523
chr22 264501 0.52% 1125
chrX 218914 0.14% 945
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 42710 1 895 235.84 264
global segment-length histogram

Files

Filename Size md5
ENCFF394DLH.bed.gz 671.39 KB 665d97b52ab2270bef1179c705616a9b
ENCFF394DLH.tabix.bed.gz 493.71 KB 8633b227b787452c208d11393738af36
ENCFF394DLH.tabix.bed.gz.tbi 212.01 KB db8a568417dc319c12237784e3f584b1
genomic_resource.yaml 1.84 KB c4b858fecd3425a7e3187573d083a0d5
statistics/