Resource
| Id | TF_ChIP-seq/ENCSR000BGT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | TF_ChIP-seq ENCSR000BGT [biosample_summary="Homo sapiens GM12878" and target="BATF"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN915BOG|/analyses/ENCAN915BOG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN915BOG|/analyses/ENCAN915BOG/} has in progress subobject document {3b9ad243-12fd-4210-842b-ecd55ff06efa|/documents/3b9ad243-12fd-4210-842b-ecd55ff06efa/} audit_warning: Processed alignments file {ENCFF859PRS|/files/ENCFF859PRS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13949632 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BATF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF755RCM|/files/ENCFF755RCM/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 15104537 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BATF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGT | float |
TF_ChIP-seq_ENCSR000BGT |
TF_ChIP-seq ENCSR000BGT [biosample_summary="Homo sapiens GM12878" and target="BATF"]
|
 |
[3.83, 443] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 7715634 | 0.24% | 37232 |
| chr1 | 691765 | 0.28% | 3329 |
| chr2 | 653467 | 0.27% | 3166 |
| chr3 | 561572 | 0.28% | 2727 |
| chr4 | 400041 | 0.21% | 1936 |
| chr5 | 459108 | 0.25% | 2225 |
| chr6 | 565197 | 0.33% | 2708 |
| chr7 | 386060 | 0.24% | 1866 |
| chr8 | 385394 | 0.27% | 1848 |
| chr9 | 302897 | 0.22% | 1460 |
| chr10 | 394044 | 0.29% | 1903 |
| chr11 | 350924 | 0.26% | 1689 |
| chr12 | 403600 | 0.30% | 1950 |
| chr13 | 213045 | 0.19% | 1028 |
| chr14 | 259962 | 0.24% | 1244 |
| chr15 | 253405 | 0.25% | 1223 |
| chr16 | 229434 | 0.25% | 1096 |
| chr17 | 279090 | 0.34% | 1351 |
| chr18 | 192139 | 0.24% | 923 |
| chr19 | 161649 | 0.28% | 762 |
| chr20 | 184045 | 0.29% | 888 |
| chr21 | 84988 | 0.18% | 422 |
| chr22 | 113376 | 0.22% | 551 |
| chrX | 190432 | 0.12% | 937 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 37232 | 1 | 608 | 207.23 | 230 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF728KFD.bed.gz | 569.45 KB | 7f22a3244fa244a435a39df67ec6a4f0 |
| ENCFF728KFD.tabix.bed.gz | 431.18 KB | 65b004d3f8b9f1f970b7f4929b861f07 |
| ENCFF728KFD.tabix.bed.gz.tbi | 219.54 KB | 55a2c0c78d076db3a2765c8366c8f5cf |
| genomic_resource.yaml | 2.56 KB | 1972993c87a145fc3a92366ba47a0321 |
| statistics/ |