TF_ChIP-seq_ENCSR000BGK
TF_ChIP-seq ENCSR000BGK [biosample_summary="Homo sapiens HepG2" and target="JUND"]
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| Id: | TF_ChIP-seq/ENCSR000BGK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BGK [biosamplesummary="Homo sapiens HepG2" and target="JUND"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN566JND|/analyses/ENCAN566JND/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF776GGM|/files/ENCFF776GGM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11210059 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF886LBC|/files/ENCFF886LBC/}, {ENCFF938YQW|/files/ENCFF938YQW/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.07 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF971UIP|/files/ENCFF971UIP/}, {ENCFF721HUX|/files/ENCFF721HUX/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.07 and a self consistency ratio of 2.34. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BGK | float |
TF_ChIP-seq_ENCSR000BGK |
TF_ChIP-seq ENCSR000BGK [biosample_summary="Homo sapiens HepG2" and target="JUND"]
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[5.39, 396] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF721HUX.bed.gz | 469.52 KB | 52a019c14919da9374985ab812f42e9d |
| ENCFF721HUX.bed.gz.dvc | 100.0 B | 52feac799561d039f3d9bceaef9f7c71 |
| ENCFF721HUX.tabix.bed.gz | 313.56 KB | 541c203ca493af3e30e755a583a0bc01 |
| ENCFF721HUX.tabix.bed.gz.dvc | 106.0 B | 809b9f3c6671633f3037ce54b4eb8aa2 |
| ENCFF721HUX.tabix.bed.gz.tbi | 158.01 KB | 519c0065a06fc848f4c6fed7a2dc33f0 |
| ENCFF721HUX.tabix.bed.gz.tbi.dvc | 110.0 B | e92c8b7c465690e495703145d3da0cb9 |
| genomic_resource.yaml | 2.97 KB | 661d10401629db94dbf6269c97ba7a6f |
| genomic_resource_original.yaml | 2.87 KB | 225e0fbb3fea2e923763aa1f53212633 |
| statistics/ |