type: position_score
table:
  filename: ENCFF182IFE.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BGE
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000BGE [biosample_summary="Homo sapiens GM12878" and target="SRF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000BGE [biosample_summary="Homo sapiens GM12878" and target="SRF"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN776BQG|/analyses/ENCAN776BQG/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_internal\\_action**: File {ENCFF182IFE|/files/ENCFF182IFE/} with status\
    \ 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status\
    \ 'archived'.\n\n**audit\\_warning**: Processed alignments file {ENCFF263NOT|/files/ENCFF263NOT/}\
    \ processed by ChIP-seq ENCODE3 GRCh38 pipeline has 16056093 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ SRF-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF731ZNW|/files/ENCFF731ZNW/} processed by ChIP-seq\
    \ ENCODE3 GRCh38 pipeline has 16181923 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting SRF-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BGE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000BGE
    date_created: '2013-09-13T16:01:11.023868-08:00'
    date_released: '2011-07-18'
    submitter_comment: 'Fastq files ENCFF000OFM and ENCFF000OFK contain reads of mixed
      lengths. Read lengths followed by respective number of reads: ENCFF000OFM (25,
      12547305), (36, 53224706); ENCFF000OFK (25, 13747457), (36, 46616535).'
    target: SRF
